How can I get the total list of RefSeq transcripts?
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5 months ago
ManuelDB ▴ 110

I use homo_sapiens_vep_112_GRCh38.tar.gz for the annotation of my pipeline. I would like to have the total list of the RefSeq transcripts of this version to do some checking and version compatibility. How can I get this list? It may be so simple but I am not able to get it.

RefSeq • 297 views
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total list of the RefSeq transcripts of this version to do some checking and version compatibility.

Unless you are interested in specific RefSeq transcripts you may want to check you MANE project which provides cross-referenced transcripts (one per gene) that are present in NCBI as well as Ensembl. https://www.ncbi.nlm.nih.gov/refseq/MANE/

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