Entering edit mode
11 weeks ago
Znow
▴
20
Hi everyone,
I'm currently working on a project where I need to download RNA-Seq data from The Cancer Genome Atlas (TCGA) using the TCGAbiolinks package in R. Additionally, I need to transform these data into Transcripts Per Million (TPM).
I would greatly appreciate it if someone could share a step-by-step tutorial or guide on how to achieve this.
I did exactly this but with the recount package https://divingintogeneticsandgenomics.com/post/how-to-convert-raw-counts-to-tpm-for-tcga-data-and-make-a-heatmap-across-cancer-types/