How to install python package scMultiCluster_kmeans

How to install python package scMultiCluster_kmeans_totalVI?

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5 months ago

KABILAN ▴ 100

I have tried to run the single-cell multiomics clustering model named scMDC (https://github.com/xianglin226/scMDC). In that model, for running the script of 'run_scMDC.py' there was a python package named "scMultiCluster_kmeans_totalVI" mentioned in line 13. I have searched various sources but I couldn't find how to install this python package. If anyone know please let me know.

conda gpu multiomics google-colab single-cell • 379 views

ADD COMMENT • link 4 months ago by KABILAN ▴ 100

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My guess is, It's not an external package you need to install. It should be a python script kept in the scMDC installation folder where you also have run_scMDC.py script. If it is not there it must be renamed or changed in dev and for this, in my opinion, the best possible solution is to contact dev team.

Regards,

Nitin N.

ADD REPLY • link 5 months ago by Nitin Narwade ★ 1.6k

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Thank you for your suggestion. I have gone through their github page. They were updated the modified code without this python package.

ADD REPLY • link 4 months ago by KABILAN ▴ 100

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