whole genome seq for Gazelle - assemble mitochondria

Question

[m90]

Hello there,

I have DNA reads for whole genome sequencing of Gazelle species at 30X coverage. I want to extract the reads for the mitochondrial genome only in order to construct the mitochondrial genome. How can I do this, and which tool can perform this function?

[GenoMax]

See tools mentioned in Sequencing and assembly of mitochondrial DNA

Tools for annotation: Mitochondrial annotation tools other than MITOS and DOGMA