QUALITY SCORE OF human vcf file genearted through GATK

Question

[ashaneev07]

Hi everyone,

I have a VCF file of a human sample. However, when I examined the file, I noticed that the quality score goes up to 10000 and the depth is above 500. Is this normal for human samples, or could it indicate pipeline errors? I haven't seen these types of values before when I worked with plant genomes. Your suggestions would be greatly appreciated.

Thank you.

[ashaneev07]

It would be greatly appreciated if some could provide suggestions. Thank you