Entering edit mode
9 weeks ago
Emilio Luis
•
0
When running CIBERTSORTx with microarray data, I found the following error:
Errors were encountered in CIBERSORTx configuration, run aborted:
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'sort': error in evaluating the argument 'x' in selecting a method for function 't': $ operator is invalid for atomic vectors
Calls: CIBERSORTxFractions ... t -> .handleSimpleError -> h -> .handleSimpleError -> h
In addition: Warning message:
In mclapply(1:svn_itor, res, mc.cores = svn_itor) :
all scheduled cores encountered errors in user code
Execution halted
My file lools like this:
GeneSymbol Infected Infected Infected Control Control Control
Copg1 9.05547958857396 9.09842341382068 9.20252729263807 9.18679834655732 9.16815599589677 9.11745514823303
Atp6v0d1 10.649027627041 10.8330202372892 10.8411617658848 10.4188560580418 10.4713111051753 10.355325052904
Golga7 10.64690584416 11.047275884921 10.764415552189 10.5425863620465 10.4908475020581 10.5324903450743
Psph 6.54495912492807 6.89427405449589 6.60312578441976 6.38852061071187 6.61392859123985 6.72354938870972
Trappc4 7.58193420102294 7.47595615279165 7.45075332466599 7.60862549608451 7.56570639906858 7.6181341856127
Dpm2 8.81858552945682 8.84400860914947 8.78812420521228 8.31019950615628 8.33045951803246 8.40494533830442
Psmb5 11.565078042626 11.7024546158213 11.5870386173979 11.6628804790374 11.8301562027949 11.7032778294648
Dhrs1 9.11788064515146 9.14524480808478 8.96678800350072 9.30677839268203 9.24091362532378 9.3884257053863
Ppm1a 8.16354365171466 8.19380284602306 8.10569718181126 8.43758680293209 8.57722916881778 8.59049233191252
Psenen 11.6807869570104 11.6765080270305 11.7344045156601 11.331467447506 11.3923380895801 11.4345886093459
Anapc1 8.44843420687438 8.51649920745884 8.45265178495367 8.51351073022163 8.54295693708559 8.62232457946339
Whether this is using the web server or running the docker image locally would be helpful info to provide.
Of the two options from the title ("error" and "cibersortx"), why pick the less meaningful one as the tag? I've fixed it for you this time but please apply yourself better in the future.