error in CIBERSORTx

Question

[Emilio Luis]

When running CIBERTSORTx with microarray data, I found the following error:

Errors were encountered in CIBERSORTx configuration, run aborted:

Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'x' in selecting a method for function 'sort': error in evaluating the argument 'x' in selecting a method for function 't': $ operator is invalid for atomic vectors
Calls: CIBERSORTxFractions ... t -> .handleSimpleError -> h -> .handleSimpleError -> h
In addition: Warning message:
In mclapply(1:svn_itor, res, mc.cores = svn_itor) :
  all scheduled cores encountered errors in user code
Execution halted

My file lools like this:

GeneSymbol  Infected    Infected    Infected    Control Control Control
Copg1   9.05547958857396    9.09842341382068    9.20252729263807    9.18679834655732    9.16815599589677    9.11745514823303
Atp6v0d1    10.649027627041 10.8330202372892    10.8411617658848    10.4188560580418    10.4713111051753    10.355325052904
Golga7  10.64690584416  11.047275884921 10.764415552189 10.5425863620465    10.4908475020581    10.5324903450743
Psph    6.54495912492807    6.89427405449589    6.60312578441976    6.38852061071187    6.61392859123985    6.72354938870972
Trappc4 7.58193420102294    7.47595615279165    7.45075332466599    7.60862549608451    7.56570639906858    7.6181341856127
Dpm2    8.81858552945682    8.84400860914947    8.78812420521228    8.31019950615628    8.33045951803246    8.40494533830442
Psmb5   11.565078042626 11.7024546158213    11.5870386173979    11.6628804790374    11.8301562027949    11.7032778294648
Dhrs1   9.11788064515146    9.14524480808478    8.96678800350072    9.30677839268203    9.24091362532378    9.3884257053863
Ppm1a   8.16354365171466    8.19380284602306    8.10569718181126    8.43758680293209    8.57722916881778    8.59049233191252
Psenen  11.6807869570104    11.6765080270305    11.7344045156601    11.331467447506 11.3923380895801    11.4345886093459
Anapc1  8.44843420687438    8.51649920745884    8.45265178495367    8.51351073022163    8.54295693708559    8.62232457946339

[jared.andrews07]

Whether this is using the web server or running the docker image locally would be helpful info to provide.

[Ram]

Of the two options from the title ("error" and "cibersortx"), why pick the less meaningful one as the tag? I've fixed it for you this time but please apply yourself better in the future.