Changing the .gmt file output format

Question

[Delicious_Puddin-chan]

Hello everyone! I'm following a tutorial for ClusterProfiler where I have to read a .gmt file in R using this command:

pwl1 <- read.gmt(file)

However, when I check the pwl1 file, it looks like this:

The output for this file on the video that I saw only has two columns (term and gene). From my understanding, that's how a .gmt file would look like normally. My file looks like a list of different vectors each has a list of gene names. I have been trying to search for a solution but found nothing. Can anyone pin point what the problem is or how to fix it? or a specific error term for this issue so I can do another google search?

Thanks in advance!

[Ram]

Please show us your sessionInfo() and mention which library the function read.gmt() is from.