Entering edit mode
4 months ago
Shicheng Guo
★
9.6k
Dear All,
Could anyone share R code to retrieve the full MONDO and DOID IDs along with associated human diseases/traits?
The final tables I want to received are:
Table for MONDO ID and Disease
Table for DOID ID and Disease
Table for UBERON ID and Tissue
Table for Cell Ontology ID and Cell Type
Thanks,
Shicheng
1
Entering edit mode
- Uniprotkb's Disease & Variants section out-of-date
- R/python script to extract Subcellular locations (Compartments) from Genecards?
- Tissue specific mRNA expression dataset in human and mouse
- Mathematical/Statistical models to predict mRNA half-life
- Receptors with internalization capability
- rsq Filter in Michigan imputation Server
- fastq-dump split-spot and skip-technical
- Awk in Bioinformatics
- Gallery: Computational tools for DNA methylation
- Server Vendors to provide bioinformatics talents
- "moving average" function for "coverage" signal in bed files?
- eagle2 + minimac4 script for phasing and imputation
- How to understand Structural Variation in bedpe format?
- Genetic variation calling (SNPs) from bulk RNA-seq dataset
- Consensus genotype of MUTECT1, MUTECT2, Varscan, Muse and Somaticsniper
- How to download GTEx figure from USCS genome browser
- Human tissue expression dataset except GTEx
- How to download dbSNP153 vcf files in hg19/GRCH37 version
- ChEMBL ID to Ensembl ID
- eQTL Catalogue Browser: limitation
- Apply beagle5.0 to make imputation and phasing under CentOS and PBS
- Phenotype Enrichment Analysis vs Gene Enrichment Analysis
- Instrumental Variables and confounder in Mendelian Randomization
- Formula of LOEUF: loss-of-function observed/expected upper bound fraction
- Individual-level data for Million Veteran Program (MVP)
- EGAD00010001497 vs EGAD00010001474
- ICD10, main ICD10 and secondary ICD10
- Structural Variation data of ICGC/PCAWG: 2,658 cancers across 38 tumour types
- Script to obtain human protein sequences by the gene symbols
- Command to download "Height" information from UKB with ukbfetch
- How to understand Instance and Array in UKB phenotype data
- KGML to SBML, BioPax, Sif (XGMML) or PSI-MI
- Roadmap Epigenomics Project Sample Amalgamation of Same Tissue?
- meta-analysis to multiple RNA-seq differential studies
- Method to Check Fastq Completeness after Fastq-dump
- bcftools merge 1021 individual vcf files
- Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
- Pros and cons to do biomedical research in pharmaceutical company
- Hg19 regions for Intergenic, Promoters, Enhancer, Exon, Intron, 5-UTR, 3-UTR and so on
- Zn binding sites and active site location in conserved domain database (CDD)
- Script to download fasta seqeuences for FGF1 to FGF12
- How to decrease the number of candidate TFs binding to gene promoter region
- Toxicity genes in metagenome RNA-seq data
- Handbooks for Bioinformatics Ninjas
- RNA-seq data including mixture samples like human, virus, bacterials
- Standard pipeline for drug target discovery and identification
- GTF annotation for Staphylococcus aureus
- Pan-cancer dataset of GENIE control data download and sharing
- Limitation of UKBB genotyping/sequencing data in drug target identificantion
- a gene become a drug target
- benefit of transfering hg19 vcf to hg38 vcf
- novel approaches to the functional assessment of genomic and/or epigenomic variants
- Linux sort P-values with scientific notation
- How to identify similar scientists based on published abstracts
- Detecting copy number variants from whole-exome sequencing data
- How to do data cleaning for VCF genetic file
- Phylogenetic tree with 0,1 matrix as the input?
- How to identify Transcript Factors (TF) binding to my target sequence
- lncRNA and mRNA regulation network database
- Hapmap3 in hg19/GRCh37 plink format PED and MAP
ADD REPLY
• link
4 months ago by
Pierre Lindenbaum
164k