how to visualize Geno Ontology classification
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5 months ago

Hi,

I have performed gene ontology (GO) analysis on a set of genes using Blast2GO. I want to visualize the results in a barplot, with the count of genes on one axis and their respective GO terms on the other, similar to the figure generated using WEGO (I found it in an article):

enter image description here

I have a tab-delimited file containing genes and their corresponding GO terms in each line, but it didn't work with WEGO. Is there any other method or tool to visualize my data in a barplot like this? Or do you have any ideas on how to debug the issue with WEGO?

Here is what my data looks like:

demo1000051 GO:0006914  GO:0007010  GO:0030163  GO:0048870  GO:0008092  GO:0060090  GO:0005634  GO:0005856
demo1000213 GO:0012501  GO:0022414  GO:0030154  GO:0048856  GO:0098772  GO:0005615  GO:0031410
demo1000411 GO:0051301  GO:0007099  GO:0000278  GO:0006289  GO:0005814  GO:0005813  GO:0005737  GO:0000922  GO:0005509  GO:0016020
demo1000691 GO:0008150  GO:0003677  GO:0005575  GO:0005634  GO:0008643  GO:0090481  GO:0015165  GO:0000139
demo1001091 GO:0006091  GO:0006520  GO:0006629  GO:0030154  GO:0048856  GO:0016491  GO:0016853  GO:0005768  GO:0005829  GO:0005886  GO:0042438  GO:0016491  GO:0033162
demo1001111
demo1001201
demo1001431 GO:0016192  GO:0005654  GO:0005783  GO:0005794  GO:0031410  GO:0006888  GO:0006890  GO:0000139  GO:0005789  GO:0030134  GO:0033116
demo1001601 GO:0002376  GO:0006954  GO:0007155  GO:0023052  GO:0034330  GO:0048856  GO:0005886  GO:0043226  GO:0016020

Thanks for your help!

Gene-ontology • 272 views
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This blog could be helpful for you.

Replicating WEGO Plots using ggplot2

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