How to get the list of species in biomart plant?

Question

[raheleh]

Hi

How can I find the list of plant species available in biomart plant?

I have this code but for different species I don't know how to find other plant.

library(biomaRt)
ensembl_plants <- useEnsemblGenomes(biomart = "plants_mart")
searchDatasets(ensembl_plants, pattern = "aestivum")

Answer 1

[Louisse_Ensembl]

Hi Raheleh, you can list available Ensembl Plants datasets as follows:

listDatasets(useMart(biomart="plants_mart", host="https://plants.ensembl.org"))

I hope this helps!

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Louisse (Ensembl Helpdesk)