Tools for estimating telomere length

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4 months ago

chictu ▴ 10

What are the best tools to estimate telomere length in cancer samples? After researching, I found a few tools below. Are there any other tools that you would suggest?

TelomereHunter

qmotif

telomere cancer • 457 views

ADD COMMENT • link updated 3 months ago by clealk ▴ 70 • written 4 months ago by chictu ▴ 10

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we used TelSeq before https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4027178/ it is kinda old.

ADD REPLY • link 4 months ago by Ming Tommy Tang ★ 4.5k

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This one is not yet published, but should be very good https://github.com/kearseya/teltool has been tested on ICGC and GEL cohorts

ADD REPLY • link 3 months ago by clealk ▴ 70

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What input data do you have ? Assembled chromosomes ? Reads ?

ADD REPLY • link 4 months ago by colindaven 7.0k

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its from WGS data.

ADD REPLY • link 4 months ago by chictu ▴ 10

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