TCGAbiolinks - fewer samples than expected
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6 weeks ago

I utilized the TCGAbiolinks package for analyzing my data, through which I downloaded 571 samples. However, upon verifying the data in the TCGA database, I found only 507 samples. I confirmed that my data did not contain any duplicates. Additionally, when using GDCRNATools, I obtained 507 samples, consistent with the TCGA database. Could you please clarify the discrepancy in the sample numbers? This issue has left me perplexed.
TCGABiolinks TCGA • 299 views
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Please ask https://support.bioconductor.org/

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What is this "TCGA database"? Do you mean GDC?

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