Analysis of Illumina Infinium MethylationEPIC v2.0

Question

[ramiro.barrantes]

I am a very beginner in analyzing Infinium Methylation EPIC v2.0 array data. In particular I am working on the QC step. However, I see that existing packages, such as RNBeads and shinyMethyl, seem to be geared towards Infinium 450k. is it ok to use those? Would it make a difference?

Any insight, pointers or suggestions appreciated.

Answer 1

[fmueller]

Yes, RnBeads fully supports all versions of the Infinium Assay