Generating Protein sequence embeddings from alphafold

Question

[singhankit973]

Hi guys,

I want to generate sequence embeddings from Alphafold and use it to train my model. I Tried but no success.

Someone please help to know to how to generate protein sequences embeddings from Alphafold. I successfully generated embeddings form ESM and ProtBERT model but Alphafold embeddings capture more structural information. So, i need to know how we can generate protein sequence embeddings form Alphafold?