Homer giving troubles

Question

[naveedhasan2000]

I am trying to run annotatePeaks.pl in the homer suite, this is the first time for me trying to run homer but i keep getting the error that some files are not found even though they are present in the mentioned directory. Can someone guide me to fix this error please ?

[jeevii]

Hello,

Please try executing and exporting the path to HOMER

export PATH=$PATH:/data//programs/Homer/bin/ #installed bin location

echo $PATH

Thanks!

[ATpoint]

Appreciate the contribution, but I said 100% the same already so what's the point?

Answer 1

[ATpoint]

My guess is that this bin folder needs to be in PATH.

export PATH=$PATH:/path/to/this/bin

[naveedhasan2000]

Thank you, much appreciated

[Bryan]

Hi ATpoint,

I installed homer and want to annotate my peaks using the mm10 genome. The genome is already installed and I can get the normal output. But the "detailed annotation" column is NA. Do you know how to fix it? Thank you a lot!

Bryan