Generate the snpfile.txt (for BLUPF90 input) in 0125 format from plink flat file (.map and .ped)?
0
0
Entering edit mode
3 months ago
tvibhaps ▴ 10

Hi, I have plink flat files (.map and .ped) of skim-seq data. These plink files have snp calls in ATGC format. I need to convert these ATGC in to 0125 format for input into BLUPF90 programs.

We tried to feed these plink files as snp_file into renumf90, that worked fine. But renumf90 output fed into BLUF90 threw error as - "Clean files will not be saved with plink format” and then program quits.

Now i am in need of how to generated 0125 format from plink file?

Anim Genotypes
 Id1  21101011002012011011010110111111211111210100
 Id2  21110101511101120221110111511112101112210100

Any idea is appreciated. Thanks.

Genotype BLUPF90 PLINK • 187 views
ADD COMMENT

Login before adding your answer.

Traffic: 2560 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6