How to Visualize ATAC-seq Peaks with Transcription Factor Binding Sites Using IGV

Question

[giegie]

Hi, I have a question regarding visualising ATACseq peaks and transcription factor binding sites. I uploaded bigwig files to IGV and I am wondering if there is a way to label transcription factor binding sites on top of those tracks based on publically available data. If that is possible can anyone let me know how to do it? I am doing my analysis in R. Thanks a lot for help!

Answer 1

[Bastien Hervé]

If you have a list of TFs from publically available data with their coordinates, you can format them as a bed file and create a new IGV track with it.