Extracting normalized counts from RDS (Seurat) file

Question

[floresbius]

I was performing scRNAseq integration between multiple datasets using Seurat and Harmony on R. I did manage to integrate but now I need to extract the normalized counts data from RDS file (Seurat Object) to use that matrix in another analyses. Is there a sufficient way or plugin/command to carry out such extraction?

[fracarb8]

The seurat documentation has a section dedicated to the object manipulations and interactions: Command cheat sheet

[Ming Tommy Tang]

Note, that Harmony does not change the underlying counts. it correct batches in the PCA space.