Hi-C analysis

Question

[SEJAL]

What is the input file required to find the correlation difference between 2 experiments using getHiCcorrDiff.pl script?

getHiCcorrDiff.pl <outputPrefix> <HiC Tag Directory1> <HiC Tag Directory2>

This command is given in the documentation. What are HiC Tag Directory1 and HiC Tag Directory2 explicitly and what information does it have?

[GenoMax]

Did you see this: http://homer.ucsd.edu/homer/ngs/tagDir.html