ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS

Question

[iamsmor]

Hello, I am encountering errors while trying to install the clusterProfiler package on Ubuntu 20.04.6 LTS with R 4.4.1 and Bioconductor 3.19. The installation fails with the following error messages. Has anyone encountered this and help me ?

    >BiocManager::install(version = "3.19", lib = "~/R/x86_64-pc-linux-gnu-library/4.4")
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.19 (BiocManager 1.30.25), R 4.4.1 (2024-06-14)
> library(BiocManager)
> BiocManager::install("clusterProfiler", lib = "~/R/x86_64-pc-linux-gnu-library/4.4")

'getOption("repos")' replaces Bioconductor standard repositories.
Replacement repositories:
    CRAN: https://cloud.r-project.org

** byte-compile and prepare package for lazy loading
Error in buildLookupTable(letter_byte_vals, codes): 'vals' must be a vector of the length of 'keys'
Error: unable to load R code in package 'Biostrings'
Execution halted
ERROR: lazy loading failed for package 'Biostrings'
* removing '~/R/x86_64-pc-linux-gnu-library/4.4/Biostrings'

... (similar errors for other dependencies like 'R.oo', 'yulab.utils', etc.) ...

ERROR: dependencies 'AnnotationDbi', 'DOSE', 'enrichplot', 'GO.db', 'GOSemSim', 'yulab.utils' are not available for package 'clusterProfiler'
* removing '~/R/x86_64-pc-linux-gnu-library/4.4/clusterProfiler'

The downloaded source packages are in '/tmp/RtmpQoyAZ0/downloaded_packages'

18 errors occurred.
Also when ı attempt

>BiocManager::install(Biostrings, force = TRUE)

byte-compile and prepare package for lazy loading
Error in buildLookupTable(letter_byte_vals, codes) : 
  vals must be a vector of the length of keys
Hata: unable to load R code in package Biostrings
Çalıştırma durduruldu
ERROR: lazy loading failed for package Biostrings
* removing /home/semra/R/x86_64-pc-linux-gnu-library/4.4/Biostrings

The downloaded source packages are in
    /tmp/RtmpQoyAZ0/downloaded_packages
Installation paths not writeable, unable to update packages
  path: /usr/lib/R/library
  packages:
    boot, codetools, foreign, lattice, Matrix, nlme
Uyarı mesajları:
In install.packages(...) :
  installation of package Biostrings had non-zero exit status
> library(Biostrings)

Error in library(Biostrings) : there is no package called Biostrings

[Pierre Lindenbaum]

Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work. If an answer was not really helpful or did not work, provide detailed feedback so others know not to use that answer.

Pathway analysis for mouse gene sets ; Automated my docking results by using script ; Downloaded pdb's on rcsb.org ; autodockvina ; autodock vina on mac ; molecular docking for a ligand to multi protein ; pymol for superimpose by python script ; etc... etc...

[iamsmor]

thank you mostly ı am using upvote if its helpful, but ı wasnot awere of accept button. I will pay attention