python package for Kendall-Colijn distances between phylogenetic trees

Question

[Hongjin]

Dose anyone know if there is a python package for Kendall-Colijn distances between phylogenetic trees? Thanks

[Mensur Dlakic]

ETE3 toolkit can calculate tree distances, though not exactly the one you want.

[Hongjin]

Thanks! I am using ETE3. Unfortunately it only support unweighted Robinson-Foulds distance. I need weighted Robinson-Foulds distance and Kendall-Colijn distance. ETE3 can not do this. Although I find some R packages meet part of the demanding. But python packages is preferred!

Answer 1

[doorholez]

I wrote a python script for calculating Kendall-Colijn distance. Maybe it will not help Hongjin, but since this is the first site from Google so I write this answer hoping it will help others in the future. Here is the link: Github link