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10 weeks ago
SEJAL
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On www.enhanceratlas.org (EnhancerAtlas 2.0), there is a database for enhancer-gene interactions for different cell lines. The data format is as follows:
For human, the data format in the file listed as "A:B-C_D$E$F$G$H I":
A - Chromosome of enhancer.
B - The starting position of enhancer.
C - The ending position of enhancer.
D - Gene ensembl ID.
E - Gene ensembl Name.
F - chromosome of gene.
G - the position of the gene transcription start site.
H - The strand of DNA the gene located.
I - The predition score of the enhancer-gene interaction.
For mouse and fly, the data format in the file listed as "A:B-C_D$E$F$G H":
A - Chromosome of enhancer.
B - The starting position of enhancer.
C - The ending position of enhancer.
D - Gene ensembl ID.
E - Gene ensembl Name.
F - chromosome of gene.
G - the position of the gene transcription start site.
H - The predition score of the enhancer-gene interaction.
what is the prediction score given in the last column (I and H)?
