Tools for assembling Plasmid Genome
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13 days ago
adarsh_munna ▴ 50

Hi,

I have three illumina-sequenced plasmid samples, which should be assembled. I have triend assembly with normal SPAdes and also with plasmidSPAdes. plasmidSPAdes gave assembly for only one sample, whereas SPAdes gave assembly for all the samples. However I am unable to obtain the required output. The expected plasmid size is about 3 to 10 kb.

Are there any other tool for doing the process?

Please suggest.

Thanks

Illumina Plasmid E.coli Assembly • 242 views
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However I am unable to obtain the required output.

And that output is?

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Hi, I am expecting an assembly with required genome size. But, I am getting too many contigs with smaller size and the BLAST is hitting against different genomes.

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