How to find overlapping regions of a gene and 18s rRNA sequences for mouse

Question

[carolofharvest]

Hi. I want to compare a genes sequence to 18s rRna sequences to see how much they similiar to each other.

Answer 1

[GenoMax]

You can do a dot plot, align the two against each other using blat or blast+.

Generally one line questions do not provide enough context to get useful answers. Please edit the question and provide additional context. e.g. Why do you want to do this?