differential abundance of two groups using one sample in one of the groups
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8 weeks ago

hi everybody,

while studying 16S amplicon sequencing soil samples (12 samples), i discovered that one of them differed from the others thanks to the Pcoa plot of the weighted UniFrac distances.

I also noticed that sample has higher concentration of Phosphorus so i wanted di discover if there were functional differentiation (using picrust2 functional annotation) of this sample from the others, preciselly toward Phosphorus metabolizing MO's.

Unfortunately i think differential abundace analysis doesnt work, i think becouse the algorithm need at least 3 samples per group... what can i do to verify if my hypotesis is true??

Thanks in advance,

Michele

amplicon_sequencing differential_abundance picrust2 soil_microbiome • 174 views
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