Started running InterProscan locally. Looks like the process isn't progressing well. Can you look at the report?

Question

[Vijith]

Performing interproscan (v.5.69-101.0) locally with Docker container. My fasta file consists of ~5 lakh sequences. The process looks like it was stuck at 14%. The server machine has 8 cores and 245GB memory. Herewith, I have provided the report hitherto. Can someone provide any valuable input?

report: https://docs.google.com/document/d/1RH8SHBXB1UJ-b6zu6ePkLnFDcf4DcUsTRYVZQKsXBvU/edit?usp=sharing

[dthorbur]

As in 500,000 sequences? If it's getting stuck, it might be better to split the input into smaller chunks and loop through them instead. At least if there are a set of sequences that are causing interproscan to hang, you'll be able to identify which more easily.