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6 hours ago
shabbas12
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10
I have downloaded the complete .vcf file for human genome (GRCh38) from [Clinvar][1]. I want to filter all the variants only from promoter regions. Could anyone please let me know how I can achieve this same results using R or any other available tools?
Get a BED file of the promoter genomes and then use
bedtools intersect(https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html ).