Clinvar Filter

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11 weeks ago

shabbas12 ▴ 10

I have downloaded the complete .vcf file for human genome (GRCh38) from [Clinvar][1]. I want to filter all the variants only from promoter regions. Could anyone please let me know how I can achieve this same results using R or any other available tools?

human genome vcf clinvar • 338 views

ADD COMMENT • link updated 11 weeks ago by GenoMax 148k • written 11 weeks ago by shabbas12 ▴ 10

1

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Get a BED file of the promoter regions and then use bedtools intersect (https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html ).

ADD REPLY • link 11 weeks ago by GenoMax 148k

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