Are there "gold standard" datasets for identification of antibiotic resistance genes from metagenomic samples?
0
0
Entering edit mode
7 weeks ago

Basically what the title says. I would like to validate a novel AMR predictor and I am looking for some standard datasets with clearly defined AMR gene content, similar to the CAMI challenge for metagenomic classification. It would be even better if they were accepted and widely used by the community.

The papers I've read so far seem to be either working with their own bacterial isolates or they don't compare their results to a ground truth at all, only to other classifiers. Does such data even exists, or should I just create my own?

amr antibiotic resistance classification metagenomics • 449 views
ADD COMMENT

Login before adding your answer.

Traffic: 1923 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6