Help on encode accessions

Question

[tsomakiank]

Hello everyone! I want to download fastq files from encode for several histone modifications and atac seq. using the experiment matrix i can find experiment accesions. However each experiment accession corresponds to several files that match to different replicates(different names) and these have again different names for paired end experiment corresponding to read1 and read2. I can not find any naming pattern on the files so it makes it very dificult after downloading all the files to know which file corresponds to which data type. Any help on that? Thank you in advance

[GenoMax]

Data organization for ENCODE is described on this page: https://www.encodeproject.org/help/data-organization/