How to download NCBI's Identical Protein Group (IPG) database

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3 months ago

Peter • 0

I often need to link IPG protein IDs to all assemblies in which they are found. To do so, I make efetch requests to IPG like so:

efetch -db ipg -id ADX88687.1 -format ipg

However, this is quite slow, even with an API key. Is it therefore possible to download the entire IPG database so that I can make these lookups locally? I realise this would be a very large file.

Thank you!

efetch IPG entrez NCBI • 386 views

ADD COMMENT • link updated 4 weeks ago by Irsan ★ 7.8k • written 3 months ago by Peter • 0

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Ask NCBI support by creating a ticket. Likely the answer is going to be no since this may not be a standalone download but a complex database structure.

ADD REPLY • link 3 months ago by GenoMax 147k

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OK, thanks for the reply!

ADD REPLY • link 3 months ago by Peter • 0

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I am having the same issue! Did you find a resolution?

ADD REPLY • link 4 weeks ago by Irsan ★ 7.8k

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