PacBio RNAseq Isoseq Pipeline question
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6 weeks ago

Hello All,

I am new to PacBio RNAseq. I have a question about the pipeline - should I map the reads (using pbmm2) on the clustered BAM (i.e. has been run through isoseq cluster2).

Thank you, Evan

Isoseq Pipeline PacBio RNAseq • 275 views
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Entering edit mode
6 weeks ago
GenoMax 148k

Recommended workflows for IsoSeq are here: https://isoseq.how/getting-started.html

Aligning to the genome follows clustering step.

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