GEOquery getGEO is normalized data or not?
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23 days ago
tyasird ▴ 10

I'm fetching microarray data using GEOquery.

datasets <- c("GSE32676", "GSE43288", "GSE19279", "GSE19280") gset <- getGEO(gse_id, GSEMatrix = TRUE, AnnotGPL = TRUE)

So, when I check the data, It doesn't seem they are normalized but when I check in biostars people say that getGEO fetchs the normalized data.

that is how my data looks like:

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getgeo geoquery microarray • 225 views
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