GEOquery getGEO is normalized data or not?
0
0
Entering edit mode
9 hours ago
tyasird ▴ 10

I'm fetching microarray data using GEOquery.

datasets <- c("GSE32676", "GSE43288", "GSE19279", "GSE19280") gset <- getGEO(gse_id, GSEMatrix = TRUE, AnnotGPL = TRUE)

So, when I check the data, It doesn't seem they are normalized but when I check in biostars people say that getGEO fetchs the normalized data.

that is how my data looks like:

enter image description here enter image description here enter image description here enter image description here

getgeo geoquery microarray • 60 views
ADD COMMENT

Login before adding your answer.

Traffic: 1367 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6