Entering edit mode
6 weeks ago
cautree
•
0
I am following GLIMPSE2 tutorial to do imputation. First, I did human chr22. Now I would like to try that on plant genome, like arabidopsis. I found genetic maps is a required input for GLIMPSE2. Is there curated site that has arabidopsis genetic map for download. In GLIMPSE2 tutorial, the chr22.b38.gmap.gz is as below
pos chr cM
15287922 22 1.457757
16370978 22 1.585395
16372046 22 1.585931
16373044 22 1.586426
16373740 22 1.586781
16374612 22 1.587307