database of gmap file for GLIMPSE2 imputation
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6 weeks ago
cautree • 0

I am following GLIMPSE2 tutorial to do imputation. First, I did human chr22. Now I would like to try that on plant genome, like arabidopsis. I found genetic maps is a required input for GLIMPSE2. Is there curated site that has arabidopsis genetic map for download. In GLIMPSE2 tutorial, the chr22.b38.gmap.gz is as below

pos     chr     cM
15287922        22      1.457757
16370978        22      1.585395
16372046        22      1.585931
16373044        22      1.586426
16373740        22      1.586781
16374612        22      1.587307
gmap GLIMPSE2 • 199 views
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