spatial transcriptomic and protemomic

Question

[Synat]

Dear All,

I have been googling to find the completion tutorial for spatial transcriptomic and proteomic in R or Python, but not quite get the right one yet. Do you happen to know the site or book I can access to learn this area. Looking forward to hearing form you soon.

Kind Regards,

Synat

Answer 1

[GenoMax]

To get you started:

https://github.com/crazyhottommy/awesome_spatial_omics

https://satijalab.org/seurat/articles/spatial_vignette
https://satijalab.org/seurat/articles/visiumhd_analysis_vignette
https://bookdown.org/sjcockell/ismb-tutorial-2023/practical-session-1.html
https://scanpy.readthedocs.io/en/stable/tutorials/spatial/basic-analysis.html

Proteomics

https://www.bioconductor.org/packages/devel/bioc/vignettes/msqrob2/inst/doc/cptac.html

Others may have more.

[Synat]

Thanks you. I appreciated your support!