Hi!
I have an issue with DOSE package for the last week.
When I'm trying to run this code:
library(DOSE)
library(org.Hs.eg.db)
library(clusterProfiler)
data(geneList)
gene <- names(geneList)[abs(geneList) > 1.5]
head(gene)
x <- enrichDO(gene = gene,
ont = "HDO",
organism = "hsa",
pvalueCutoff = 0.05,
pAdjustMethod = "BH",
universe = names(geneList),
minGSSize = 5,
maxGSSize = 500,
qvalueCutoff = 0.05,
readable = FALSE)
It returns with:
Error in get("EXTID2PATHID", envir = USER_DATA) :
object 'EXTID2PATHID' not found
I don't know how but it worked without any issue earlier. I encounter this error both in Windows version and in Linux version for servers.
Maybe someone knows a solution to this issue?
