Entering edit mode
21 days ago
ramiro.barrantes
•
0
I am trying to run the following:
genome = useMart(biomart="ENSEMBL_MART_ENSEMBL",
host = "https://www.ensembl.org",
dataset="hsapiens_gene_ensembl")
Sometimes it works, other times I get
Error in
req_perform()
: ! HTTP 500 Internal Server Error. Runrlang::last_trace()
to see where the error occurred.
or
"Error in .getAttributes(mart, verbose = verbose) : biomaRt error: looks like we're connecting to incompatible version of BioMart."
or
Error: Your query has been redirected to http://status.ensembl.org indicating this Ensembl service is currently unavailable. Look at ?useEnsembl for details on how to try a mirror site.
This used to work perfectly in the past. I am using biomaRt_2.60.1
Any help appreciated
I have been having problems connecting to various Ensembl sites for the past week or two. I think maybe they're experiencing some issues.
Agreed with Dave, 500 is server error.