Kmerfinder database with bacteria, archea, and eukaryotic data

Question

[Mark]

Is there a K-mer database that has all the kmers known across the tree of life? So far I've only been using on that has bacterial species.

Answer 1

[lieven.sterck]

lmgtfy ...

www.kmerdb.com ?

paper: https://pmc.ncbi.nlm.nih.gov/articles/PMC11070822/

don't know it myself but seems to be what you're looking for.

[Mark]

Those databases also seems to be split by domain. I’m looking for a single database of kmers across all species across the tree of life, excluding viruses

[lieven.sterck]

Maybe contact them perhaps they have such a dataset as well? (or they might give you some tips on where to find it or if you can compile it in some way?)