Choosing the better input files for COGclassifier tool
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22 days ago
anna • 0

Hi, i'm working with 10 bacterial genomes and i would like to assign COG classification for all the genes contained in my sequences. I used PGAP and Prokka to annotate them and to find some specific genes. Now I'm trying to use the COGclassifier tool implemented on Conda/Ubuntu, using the .faa files (only translated sequences) downloaded from Prokka, that i concatenated using CAT command. Is this the right way to proceed or there is another better? It's the first time i make these kind of analysis. Hope someone could help me.

A.

classifier COG • 163 views
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