Hello all,
I have a summarized experiment containing salmon-predicted transcript counts. I am primarily interested in getting the sequence for the 3'utrs for all a gene's various alternative transcripts that have a distinct 3'utr. Im wondering what would be the most efficient way of getting this data. Previously, when working on gene counts, I used the biomart mane select option to download a single representative 3'utr, but I am unsure of how to get transcript-specific 3'utrs from biomart, if that is even possible. Alternatively, is there another database you would recommend? Please let me know your thoughts.
Thanks!
Thanks! This worked like a charm. I appreciate the help.