A newbie here.
I am trying to run mafft --auto input.fasta > output.aln for a few ONT .fasta files of genomic sequences.
I'm using a bash script to perform mafft alignment on all .fasta files in the working directory, but the command is taking ages to execute and I'm wondering if * and ? in the files are causing the delay. Or is it just the sizes of the files that are causing the delay.
Any feedback, comment, or suggestion regarding this issues would be appreciated.
Thank you