Unicycler error

Question

[María José]

Hello,

I'm running Unicycler on a server, and I'm encountering an error when launching it through a job queue. The error message is: "Error: SPAdes encountered an error."

I've come across a recommendation in a GitHub discussion to include --spades_options -m 1024 in the script. However, I would like to ask how to visualize the dependencies that Unicycler need to ensure everything is correct. like this

[Arup Ghosh]

Many tools do not offer a way to visualize the required dependencies, but you will find them in the installation instructions or readme page.

To avoid dependency-related headaches, use the conda or mamba package manager.

Example

https://github.com/rrwick/Unicycler/tree/main?tab=readme-ov-file#requirements

https://bowtie-bio.sourceforge.net/bowtie2/manual.shtml (section: Obtaining Bowtie 2)