Pipelines/Tools for cleaning UK Biobank data?

Question

[Christian]

I’m working with the UK Biobank RAP and have finally figured out how to pull data of interest from my .dataset into a virtual RStudio session using dx runtable-exporter. I can analyze it there, but I’m realizing that a lot of preprocessing is needed—harmonizing phenotypic data, handling bulk datasets, and ensuring everything is clean for analysis.

Given how widely used UKBB is, I imagine many researchers must be following similar preprocessing steps. Are there any pipelines, workflows, tools, or packages that people have developed for cleaning, for example, NMR Metabolomics? Open-source solutions, GitHub repos, or even general best practices would be really helpful.