Mitochondrial Variant Calling Tools

Question

[adarsh]

Hi,

I am working on a mitochondrial variant calling project from bovine (cattle) samples. I need to perform variant calling and heteroplasmy analysis. I need suggestions for a suitable variant caller for these analyses. Can I use GATK Mutect2 in mitochondria mode in this case?

Please let me know any other suggestions

Thanks

Adarsh

[Pierre Lindenbaum]

you already asked : Mitochondrial Genome Variant Calling and Annotation Tools

[adarsh]

Hi, I found a tool that can perform this analysis - Mutserve2