Can I combine segment results from Sequenza and cnvkit?

Question

[Ram]

Hi,

I have CNV segment data from Sequenza for tumor-normal samples and CNV segment data from cnvkit for tumor-only samples.

Can I combine these two datasets for downstream analysis? Ideally, I'd like to run them all through GISTIC and display them side-by-side. Is there a downside to doing this?

[GenoMax]

Posting this on https://github.com/etal/cnvkit/discussions may get a response.

[Ram]

Thank you, I have posted there; link: https://github.com/etal/cnvkit/discussions/948