Cellosaurus release 52 is available on https://www.cellosaurus.org/
1) Statistics
- 163868 cell lines (121295 human, 29536 mouse, 3115 rat)
- 891 species represented
- 124476 synonyms
- 468374 cross-references to 116 resources (cell line catalogs, databases, ontologies, etc.)
- 166137 references to 29267 distinct publications (papers, patents, theses, etc.)
- 15169 web links
- 9173 human, mouse and dog cell lines with STR profiles (from 941 distinct sources)
- 2569 NCIt and 1384 ORDO (Orphanet) disease terms cited
- 854 UBERON, 276 CL and 11 PO terms cited
Since release 51 of December 2024: 2671 entries were created and 39770 entries were updated
2) Changes in the format of the WW lines
In previous releases, a WW line contained only a web address (URL).
Examples:
WW https://www.thermofisher.com/ch/en/home/technical-resources/cell-lines/h/cell-lines-detail-204.html
WW https://www.vircell.com/en/products/hep-2-cell-line
WW https://iclac.org/wp-content/uploads/Cross-Contaminations_v13_distribution.xlsx
WW https://es.wikipedia.org/wiki/C%C3%A9lulas_HEp-2
Starting with this release, a WW contains four distinct fields as shown here:
WW Info|Provider; Institution/organization_name|-; Document/catalog_identifier|-; URL
- The first field ("Info" or "Provider") designates whether the associated web link pertains to data relevant to the cell line or pertains to information regarding an entity supplying the cell line.
- The name or abbreviation of the institution or organization referenced by the web link; if unavailable, a dash ("-") is used as a placeholder.
The document or catalog identifier; if unavailable, a dash ("-") is used as a placeholder.
Examples: WW Info; -; -; http://hek293genome.org/v2 WW Info; ICLAC; -; https://iclac.org/wp-content/uploads/Cross-Contaminations_v13_distribution.xlsx WW Info; Wikipedia; -; https://en.wikipedia.org/wiki/KBM-7_cells WW Provider; BRICS; BRICS0120; http://www.brics.ac.cn/cell/template/cell/cell_detail.html?id=3924 WW Provider; Tufts TTIC; T001034; https://viceprovost.tufts.edu/research-tool-cell-line-near-haploid-mammalian-cell-line
3) Changes in the CC omics comment
This comment is now structured in a hierarchical manner with between 1 to 4 levels.
The first level is made of 8 different categories of omics experiments:
Genomics
Glycomics
Lipidomics
Metabolomics
Phenotyping
Proteomics
Transcriptomics
Variations
The next levels allows more precise description of specific experiments.
Examples:
CC Omics: Genomics; Whole exome sequencing.
CC Omics: Glycomics; N-glycan profiling.
CC Omics: Phenotyping; CRISPR screening.
CC Omics: Proteomics; PTM; Phosphorylation; Quantitative.
CC Omics: Proteomics; Subcellular; Mitochondrion.
CC Omics: Transcriptomics; RNAseq; Single cell.
CC Omics: Variations; SNP array analysis.
4) Changes in the DR lines
4a) Cross-references were added to the cell lines products from Evercyte.
Prevously web links were provided to this resources, but we upgraded them to cross-references.
Corresponding entry in the file cellosaurus_xrefs.txt:
Abbrev: Evercyte
Name : Evercyte cell line products
Server: https://evercyte.com/
Db_URL: https://evercyte.com/?s=%s
Term. : No
Cat : Cell line collections (Providers)
//
Example:
DR Evercyte; CHT-008-0164
4b) Cross-references were added to the expression data in the Functional Annotation of the Mammalian Genome - Samples, Transcription initiatio And Regulators (FANTOM5_SSTAR) project.
Corresponding entry in the file cellosaurus_xrefs.txt:
Abbrev: FANTOM5_SSTAR
Name : Functional Annotation of the Mammalian Genome - Samples, Transcription initiation And Regulators
Server: https://fantom.gsc.riken.jp/5/sstar/Main_Page
Db_URL: https://fantom.gsc.riken.jp/5/sstar/FF:%s
Term. : No
Cat : Gene expression databases
//
Example:
DR FANTOM5_SSTAR; 10563-108A5
4c) Cross-references were added to the cell lines products from GenScript.
Prevously web links were provided to this resources, but we upgraded them to cross-references.
Corresponding entry in the file cellosaurus_xrefs.txt:
Abbrev: GenScript
Name : GenScript cell line products
Server: https://www.genscript.com/cell_lines.html
Db_URL: https://www.genscript.com/search?q=%s
Term. : No
Cat : Cell line collections (Providers)
//
Example:
DR GenScript; M00250
4d) Cross-references were added to the cell lines products from InvivoGen.
Prevously web links were provided to this resources, but we upgraded them to cross-references.
Corresponding entry in the file cellosaurus_xrefs.txt:
Abbrev: InvivoGen
Name : InvivoGen cell line products
Server: https://www.invivogen.com/cell-lines
Db_URL: https://www.invivogen.com/search?sq=%s
Term. : No
Cat : Cell line collections (Providers)
//
Example:
DR InvivoGen; 293d-null
