Detection SNPs and Indels Bacteria

Question

[Eltercertopico]

Hi,

I'm new to bioinformatics and genomic analysis. I'd like to ask what tools I can use to detect SNPS and indels in multiple bacterial genomes, and what possible databases I could use to assess the relevance of the findings.

Thank you very much.

Answer 1

[Istvan Albert]

The breseq pipeline is a good start

https://barricklab.org/twiki/bin/view/Lab/ToolsBacterialGenomeResequencing

other alternatives exist.