How To Find Core Genome Snp

Question

[HG]

Hi everyone, I have 10bacterial genome(reads + asselble file) and i wolud like to find core genome SNP among all those genome. Can anyone suggest me how to proced ?? Thank you advance.

[Biomonika (Noolean)]

You mean something like generating 3 VCF files with SNPs and then intersecting them? (http://bedtools.readthedocs.org/en/latest/content/tools/intersect.html)