What tools can I use to calculate/retrieve protein 3D structural properties like Volume, Pockets, ASA etc?
Some tools similar to Piface, 2P2I Inspector, that can help me calculate interface properties!
What tools can I use to calculate/retrieve protein 3D structural properties like Volume, Pockets, ASA etc?
Some tools similar to Piface, 2P2I Inspector, that can help me calculate interface properties!
Have you tried RaptorX?
EDIT:
Surely one of these would work, then?
If you want to use a web-based tool, the WHATIF server provides a large number of tools for protein structure analysis.
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No. I'll just have a look. Thanks
It seems to predict the 3D structure? I need something that can help me predict structural properties like volume, ASA, pockets etc using the PDB ID or the protein sequence or anything else, but it should predict some property. Please let me know if I've misunderstood RaptorX and how it can help me predict property as well.
Answer updated.
You are correct; RaptorX is nothing to do with your problem.