Find Multiple Orf In Batch

Question

[mgarnier]

Hi, I have about 1 000 transcipts sequences. Some of them contains several ORFs I want to find and extract all the ORF of all the sequences. How can I do?? ORF finder do not functionne on multiple sequences. Thanks

Matthieu

[Devon Ryan]

Have you tried biopython? It even has an example of doing this in the tutorial...

[jinxyhucy521]

Hi,does the problem have been solved?I have also face the similar problem!So if you have solved this question,could you give me a guide?

Answer 1

[Prakki Rama]

You can try getORF from emboss, ORFpredictor

check Program For Finding Orf And Corresponding Reading Frame thread. It might help you.